# -*- coding: utf-8 -*-
###########################################################################
# Copyright (c), The AiiDA team. All rights reserved. #
# This file is part of the AiiDA code. #
# #
# The code is hosted on GitHub at https://github.com/aiidateam/aiida-core #
# For further information on the license, see the LICENSE.txt file #
# For further information please visit http://www.aiida.net #
###########################################################################
"""Delete trajectory symbols array from the repository and the reference in the attributes
Revision ID: ce56d84bcc35
Revises: 12536798d4d3
Create Date: 2019-01-21 15:35:07.280805
"""
# pylint: disable=invalid-name
from __future__ import division
from __future__ import print_function
from __future__ import unicode_literals
from __future__ import absolute_import
# Remove when https://github.com/PyCQA/pylint/issues/1931 is fixed
# pylint: disable=no-member,no-name-in-module,import-error
import numpy
from alembic import op
from sqlalchemy.sql import table, column, select, func, text
from sqlalchemy import String, Integer, cast
from sqlalchemy.dialects.postgresql import UUID, JSONB
from aiida.backends.general.migrations import utils
# revision identifiers, used by Alembic.
revision = 'ce56d84bcc35'
down_revision = '12536798d4d3'
branch_labels = None
depends_on = None
[docs]def upgrade():
"""Migrations for the upgrade."""
# yapf:disable
connection = op.get_bind()
DbNode = table('db_dbnode', column('id', Integer), column('uuid', UUID), column('type', String),
column('attributes', JSONB))
nodes = connection.execute(
select([DbNode.c.id, DbNode.c.uuid]).where(
DbNode.c.type == op.inline_literal('node.data.array.trajectory.TrajectoryData.'))).fetchall()
for pk, uuid in nodes:
connection.execute(
text("""UPDATE db_dbnode SET attributes = attributes #- '{{array|symbols}}' WHERE id = {}""".format(pk)))
utils.delete_numpy_array_from_repository(uuid, 'symbols')
[docs]def downgrade():
"""Migrations for the downgrade."""
# yapf:disable
connection = op.get_bind()
DbNode = table('db_dbnode', column('id', Integer), column('uuid', UUID), column('type', String),
column('attributes', JSONB))
nodes = connection.execute(
select([DbNode.c.id, DbNode.c.uuid]).where(
DbNode.c.type == op.inline_literal('node.data.array.trajectory.TrajectoryData.'))).fetchall()
for pk, uuid in nodes:
attributes = connection.execute(select([DbNode.c.attributes]).where(DbNode.c.id == pk)).fetchone()
symbols = numpy.array(attributes['symbols'])
utils.store_numpy_array_in_repository(uuid, 'symbols', symbols)
key = op.inline_literal('{"array|symbols"}')
connection.execute(DbNode.update().where(DbNode.c.id == pk).values(
attributes=func.jsonb_set(DbNode.c.attributes, key, cast(list(symbols.shape), JSONB))))